AC004922.1 (novel protein, ARPC1A and ARPC1B readthrough) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AC004922.1 (novel protein, ARPC1A and ARPC1B readthrough) Homo sapiens
Analyze
Symbol: AC004922.1
Name: novel protein, ARPC1A and ARPC1B readthrough
RGD ID: 16570399
Description: ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN Arp2/3 complex-mediated actin nucleation (inferred); FOUND IN actin cytoskeleton (inferred); Arp2/3 protein complex (inferred); cytoplasm (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl799,325,879 - 99,394,653 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium
Low 12
Below cutoff 1 7 6 6 239 6 8 5 14 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000441989   ⟹   ENSP00000412879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,325,898 - 99,388,164 (+)Ensembl
RefSeq Acc Id: ENST00000638617   ⟹   ENSP00000491073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,325,879 - 99,394,653 (+)Ensembl
Protein Sequences
Ensembl Protein ENSP00000412879.1
  ENSP00000491073.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000491073   ⟸   ENST00000638617
RefSeq Acc Id: ENSP00000412879   ⟸   ENST00000441989


Additional Information

Database Acc Id Source(s)
COSMIC AC004922.1 COSMIC
Ensembl Genes ENSG00000284292 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000441989.6 UniProtKB/TrEMBL
  ENST00000638617.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
GTEx ENSG00000284292 GTEx
Human Proteome Map AC004922.1 Human Proteome Map
InterPro ARPC1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1A UniProtKB/TrEMBL
  PTHR10709 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A1W2PNV4_HUMAN UniProtKB/TrEMBL
  F8WFD3_HUMAN UniProtKB/TrEMBL