AC090912.3 (novel transcript, sense intronic to RBBP8) - Rat Genome Database

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Gene: AC090912.3 (novel transcript, sense intronic to RBBP8) Homo sapiens
Analyze
Symbol: AC090912.3
Name: novel transcript, sense intronic to RBBP8
RGD ID: 16566762
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1822,882,825 - 22,883,357 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENST00000609775
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 109 26 181 58 300 25 221 22 115 58 582 205 37 36 104 1
Below cutoff 1187 800 970 303 488 201 1968 565 1515 229 522 845 110 563 1090 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1822,882,825 - 22,883,357 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090912.3 COSMIC
Ensembl Genes ENSG00000273232 Ensembl
GTEx ENSG00000273232 GTEx
Human Proteome Map AC090912.3 Human Proteome Map