AC092574.1 (novel transcript) - Rat Genome Database

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Gene: AC092574.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC092574.1
Name: novel transcript
RGD ID: 16566599
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4416,118 - 416,537 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:249
Interacting mature miRNAs:260
Transcripts:ENST00000390148, ENST00000609771
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 2 6 1 5 1
Low 1891 808 1299 268 813 180 1946 945 3448 316 1241 1209 96 556 1212 3
Below cutoff 483 1392 330 265 380 205 1935 1018 231 89 168 318 65 553 1265 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4416,118 - 416,537 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC092574.1 COSMIC
Ensembl Genes ENSG00000272885 Ensembl
GTEx ENSG00000272885 GTEx
Human Proteome Map AC092574.1 Human Proteome Map