AP000525.1 (novel transcript, sense intronic to novel transcript) - Rat Genome Database

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Gene: AP000525.1 (novel transcript, sense intronic to novel transcript) Homo sapiens
Analyze
Symbol: AP000525.1
Name: novel transcript, sense intronic to novel transcript
RGD ID: 16566595
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2215,823,197 - 15,823,890 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENST00000608286
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 74 33 20 88 22 69 47 77 36 129 151 4 2
Low 585 596 856 104 355 84 1336 372 1552 116 898 618 22 877 739 2
Below cutoff 1197 1335 601 319 349 224 1871 1247 1576 176 275 633 96 299 1364

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000608286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2215,823,197 - 15,823,890 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000525.1 COSMIC
Ensembl Genes ENSG00000272872 Ensembl
GTEx ENSG00000272872 GTEx
Human Proteome Map AP000525.1 Human Proteome Map