AC253536.6 (novel transcript) - Rat Genome Database

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Pathways
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Gene: AC253536.6 (novel transcript) Homo sapiens
Analyze
Symbol: AC253536.6
Name: novel transcript
RGD ID: 16566548
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2223,969,211 - 23,969,873 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:187
Interacting mature miRNAs:195
Transcripts:ENST00000609736
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 1 134 128 20 128 6 65 7
Low 2319 2293 1524 447 1567 290 3538 1358 2990 367 1336 1520 168 1052 2103 3
Below cutoff 86 656 47 33 294 31 770 778 689 32 27 46 2 149 644 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2223,969,211 - 23,969,873 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC253536.6 COSMIC
Ensembl Genes ENSG00000272787 Ensembl
GTEx ENSG00000272787 GTEx
Human Proteome Map AC253536.6 Human Proteome Map