AC007620.3 (novel transcript, antisense to GNB4) - Rat Genome Database

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Gene: AC007620.3 (novel transcript, antisense to GNB4) Homo sapiens
Analyze
Symbol: AC007620.3
Name: novel transcript, antisense to GNB4
RGD ID: 16566507
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3179,405,448 - 179,405,944 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:659
Count of miRNA genes:489
Interacting mature miRNAs:528
Transcripts:ENST00000495081, ENST00000598857, ENST00000600539, ENST00000608131
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 936 687 582 60 684 33 1746 649 2147 74 638 643 34 373 1112 1
Below cutoff 1255 1619 795 352 606 239 2087 1309 1363 227 659 749 118 690 1373 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000608131
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,405,448 - 179,405,944 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC007620.3 COSMIC
Ensembl Genes ENSG00000272699 Ensembl
GTEx ENSG00000272699 GTEx
Human Proteome Map AC007620.3 Human Proteome Map