AL139424.1 (novel transcript, antisense to APITD1-CORT) - Rat Genome Database

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Gene: AL139424.1 (novel transcript, antisense to APITD1-CORT) Homo sapiens
Analyze
Symbol: AL139424.1
Name: novel transcript, antisense to APITD1-CORT
RGD ID: 16566202
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl110,429,881 - 10,430,677 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:326
Count of miRNA genes:302
Interacting mature miRNAs:325
Transcripts:ENST00000607572
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 270
Low 34 1 17 9 137 11 48 35 42 37 214 101 3 3
Below cutoff 610 437 414 136 612 72 878 267 1178 206 327 447 71 261 432 1

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENST00000607572
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl110,429,881 - 10,430,677 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL139424.1 COSMIC
Ensembl Genes ENSG00000271989 Ensembl
GTEx ENSG00000271989 GTEx
Human Proteome Map AL139424.1 Human Proteome Map