AC090948.1 (novel transcript, antisense to RFTN1) - Rat Genome Database

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Gene: AC090948.1 (novel transcript, antisense to RFTN1) Homo sapiens
Analyze
Symbol: AC090948.1
Name: novel transcript, antisense to RFTN1
RGD ID: 16566188
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl316,314,439 - 16,314,987 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:137
Interacting mature miRNAs:139
Transcripts:ENST00000607464
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 13 13 6 68 9 1 3 11 3 4 4
Low 2321 2649 1556 547 1745 404 4138 2017 3397 381 1358 1526 153 1187 2615 4
Below cutoff 83 305 158 74 119 59 191 172 299 35 65 70 16 13 160

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000607464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl316,314,439 - 16,314,987 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090948.1 COSMIC
Ensembl Genes ENSG00000271964 Ensembl
GTEx ENSG00000271964 GTEx
Human Proteome Map AC090948.1 Human Proteome Map