AC104695.2 (novel transcript) - Rat Genome Database

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Gene: AC104695.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC104695.2
Name: novel transcript
RGD ID: 16565431
Description:
Type: lncrna
Previously known as: AC104695.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl228,425,945 - 28,426,719 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:82
Interacting mature miRNAs:85
Transcripts:ENST00000427929, ENST00000445878, ENST00000605056
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 212 1251 11 2 296 1 1210 527 108 23 129 119 1 95 1168
Low 2139 1559 1343 298 937 151 2878 1507 2390 358 1049 1344 154 1102 1617 2
Below cutoff 58 163 318 274 164 265 109 143 1105 31 242 114 15 7 2 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000605056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl228,425,945 - 28,426,719 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC104695.2 COSMIC
Ensembl Genes ENSG00000270210 Ensembl
GTEx ENSG00000270210 GTEx
Human Proteome Map AC104695.2 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC104695.2  novel transcript  AC104695.3  novel transcript  Symbol and/or name change 19259462 PROVISIONAL