SLBP-DT (SLBP divergent transcript) - Rat Genome Database

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Gene: SLBP-DT (SLBP divergent transcript) Homo sapiens
Analyze
Symbol: SLBP-DT (Ensembl: AC016773.1)
Name: SLBP divergent transcript (Ensembl:novel transcript)
RGD ID: 16565424
Description:
Type: lncrna
Previously known as: AC016773.1; AC016773.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl41,712,821 - 1,715,945 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:509
Count of miRNA genes:415
Interacting mature miRNAs:461
Transcripts:ENST00000404054, ENST00000605571
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 86 131 302 10 467 11 163 25 271 11 630 283 2 8 159
Low 2334 2714 1325 523 1455 364 3869 1797 3352 357 805 1306 168 1190 2337 3
Below cutoff 11 135 86 79 24 79 315 360 83 45 11 16 6 285 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000605571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl41,712,821 - 1,713,622 (+)Ensembl
RefSeq Acc Id: ENST00000652002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl41,712,858 - 1,715,945 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SLBP-DT COSMIC
Ensembl Genes ENSG00000270195 Ensembl
GTEx ENSG00000270195 GTEx
Human Proteome Map SLBP-DT Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-20 SLBP-DT  SLBP divergent transcript  AC016773.2  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-02-07 AC016773.2  novel transcript  AC016773.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL