AL359881.2 (novel transcript) - Rat Genome Database

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Gene: AL359881.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL359881.2
Name: novel transcript
RGD ID: 16565353
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl17,698,303 - 7,698,872 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:125
Interacting mature miRNAs:127
Transcripts:ENST00000602973
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 169 11 8
Low 689 331 697 182 324 51 1480 272 2954 243 972 896 133 241 889
Below cutoff 1328 1499 610 211 395 189 1830 1154 540 124 324 537 26 755 1078 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000602973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl17,698,303 - 7,698,872 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL359881.2 COSMIC
Ensembl Genes ENSG00000270035 Ensembl
GTEx ENSG00000270035 GTEx
Human Proteome Map AL359881.2 Human Proteome Map