AL359881.1 (novel transcript) - Rat Genome Database

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Gene: AL359881.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL359881.1
Name: novel transcript
RGD ID: 16565326
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl17,700,704 - 7,700,970 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:301
Count of miRNA genes:290
Interacting mature miRNAs:301
Transcripts:ENST00000602916
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 108 12 24 12 16 5 384 22 102 50 1 5
Low 1390 1066 890 254 457 109 2393 650 3135 302 1074 1245 149 700 1371 1
Below cutoff 734 955 385 169 231 161 1148 878 164 61 176 177 14 398 755 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000602916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl17,700,704 - 7,700,970 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL359881.1 COSMIC
Ensembl Genes ENSG00000269978 Ensembl
GTEx ENSG00000269978 GTEx
Human Proteome Map AL359881.1 Human Proteome Map