AC010319.4 (novel transcript, antisense FAM125A) - Rat Genome Database

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Gene: AC010319.4 (novel transcript, antisense FAM125A) Homo sapiens
Analyze
Symbol: AC010319.4
Name: novel transcript, antisense FAM125A
RGD ID: 16565195
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1917,414,257 - 17,422,324 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:299
Count of miRNA genes:240
Interacting mature miRNAs:249
Transcripts:ENST00000593957
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 36 6 7 6 82 36
Low 2302 2503 1559 517 1683 356 3837 1546 3459 326 1305 1444 167 1182 2305 1
Below cutoff 96 459 94 76 195 78 469 590 228 69 35 75 2 21 448 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000593957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1917,414,257 - 17,422,324 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010319.4 COSMIC
Ensembl Genes ENSG00000269481 Ensembl
GTEx ENSG00000269481 GTEx
Human Proteome Map AC010319.4 Human Proteome Map