AC093503.1 (novel transcript, sense intronic to PPP5D1) - Rat Genome Database

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Gene: AC093503.1 (novel transcript, sense intronic to PPP5D1) Homo sapiens
Analyze
Symbol: AC093503.1
Name: novel transcript, sense intronic to PPP5D1
RGD ID: 16564970
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1946,547,056 - 46,600,861 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:458
Count of miRNA genes:351
Interacting mature miRNAs:372
Transcripts:ENST00000593888, ENST00000598743
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 49 67 375 18 144 9 209 39 276 59 576 339 12 31 173
Below cutoff 1841 2051 1168 456 1002 319 3353 1729 2946 305 741 1079 144 968 2175 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000593888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1946,547,056 - 46,600,861 (-)Ensembl
RefSeq Acc Id: ENST00000598743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1946,568,078 - 46,589,154 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC093503.1 COSMIC
Ensembl Genes ENSG00000268423 Ensembl
GTEx ENSG00000268423 GTEx
Human Proteome Map AC093503.1 Human Proteome Map