AC123912.2 (novel transcript) - Rat Genome Database

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Gene: AC123912.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC123912.2
Name: novel transcript
RGD ID: 16564941
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1921,587,432 - 21,594,628 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:543
Count of miRNA genes:407
Interacting mature miRNAs:440
Transcripts:ENST00000594927, ENST00000599524
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 49 49 84 49
Low 12 255 39 4 279 4 234 228 5 11 302 33 1 227
Below cutoff 981 1196 880 223 938 135 1556 800 1217 179 633 996 98 473 864 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000594927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1921,587,432 - 21,594,006 (-)Ensembl
RefSeq Acc Id: ENST00000599524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1921,593,685 - 21,594,628 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC123912.2 COSMIC
Ensembl Genes ENSG00000268240 Ensembl
GTEx ENSG00000268240 GTEx
Human Proteome Map AC123912.2 Human Proteome Map