AC130469.1 (novel transcript, antisense to ADAMTS10) - Rat Genome Database

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Gene: AC130469.1 (novel transcript, antisense to ADAMTS10) Homo sapiens
Analyze
Symbol: AC130469.1
Name: novel transcript, antisense to ADAMTS10
RGD ID: 16564887
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl198,581,160 - 8,582,715 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:232
Interacting mature miRNAs:237
Transcripts:ENST00000597256
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 4 2 2
Low 1053 1611 821 190 425 146 2711 551 1417 129 827 932 45 988 1673
Below cutoff 1031 950 705 323 606 223 1140 1185 1811 155 412 412 103 194 810 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000597256
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl198,581,160 - 8,582,715 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC130469.1 COSMIC
Ensembl Genes ENSG00000267986 Ensembl
GTEx ENSG00000267986 GTEx
Human Proteome Map AC130469.1 Human Proteome Map