AC008946.1 (novel transcript) - Rat Genome Database

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Gene: AC008946.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC008946.1
Name: novel transcript
RGD ID: 16564880
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl198,008,729 - 8,016,025 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:148
Interacting mature miRNAs:153
Transcripts:ENST00000599756
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 1 8 38 52 4 20 3 46 46 3
Low 1682 1237 1362 391 985 298 2820 1345 3396 386 1208 1319 102 791 1860 4
Below cutoff 655 1222 316 200 513 143 1213 730 271 26 163 200 57 349 768

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000599756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl198,008,729 - 8,016,025 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008946.1 COSMIC
Ensembl Genes ENSG00000267939 Ensembl
GTEx ENSG00000267939 GTEx
Human Proteome Map AC008946.1 Human Proteome Map