AC100793.3 (novel transcript, antisense to CNTNAP1) - Rat Genome Database

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Gene: AC100793.3 (novel transcript, antisense to CNTNAP1) Homo sapiens
Analyze
Symbol: AC100793.3
Name: novel transcript, antisense to CNTNAP1
RGD ID: 16564831
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1742,683,187 - 42,699,466 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:406
Count of miRNA genes:317
Interacting mature miRNAs:334
Transcripts:ENST00000592440
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 10 29 21 11 5 374 1 47 2 11
Low 1746 1690 935 120 797 39 2882 1634 2995 126 1094 1140 88 1009 1963 1
Below cutoff 502 688 481 279 460 218 1148 497 300 208 220 346 66 166 655 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000592440
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1742,683,187 - 42,699,466 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC100793.3 COSMIC
Ensembl Genes ENSG00000267765 Ensembl
GTEx ENSG00000267765 GTEx
Human Proteome Map AC100793.3 Human Proteome Map