AP005264.4 (solute carrier family 5 (low affinity glucose cotransporter), member 4 (SLC5A4) pseudogene) - Rat Genome Database

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Gene: AP005264.4 (solute carrier family 5 (low affinity glucose cotransporter), member 4 (SLC5A4) pseudogene) Homo sapiens
Analyze
Symbol: AP005264.4
Name: solute carrier family 5 (low affinity glucose cotransporter), member 4 (SLC5A4) pseudogene
RGD ID: 16564813
Description:
Type: transcribed_processed_pseudogene
Previously known as: AP005264.5
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1812,201,982 - 12,223,539 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:818
Count of miRNA genes:540
Interacting mature miRNAs:602
Transcripts:ENST00000586642, ENST00000586882, ENST00000588436, ENST00000588744, ENST00000592801
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 15 311 2
Low 54 3 26 13 106 12 111 11 321 28 212 418 10 28 47
Below cutoff 1249 1066 853 284 957 145 2327 1003 1602 107 544 831 142 627 1323 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000586642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1812,208,398 - 12,212,465 (+)Ensembl
RefSeq Acc Id: ENST00000586882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1812,209,336 - 12,223,539 (+)Ensembl
RefSeq Acc Id: ENST00000588436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1812,213,407 - 12,222,998 (+)Ensembl
RefSeq Acc Id: ENST00000588744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1812,218,652 - 12,223,251 (+)Ensembl
RefSeq Acc Id: ENST00000592801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1812,201,982 - 12,212,072 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP005264.4 COSMIC
Ensembl Genes ENSG00000267733 Ensembl
GTEx ENSG00000267733 GTEx
Human Proteome Map AP005264.4 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AP005264.4  solute carrier family 5 (low affinity glucose cotransporter), member 4 (SLC5A4) pseudogene  AP005264.5  solute carrier family 5 (low affinity glucose cotransporter), member 4 (SLC5A4) pseudogene  Symbol and/or name change 19259462 PROVISIONAL