AC008759.2 (novel transcript) - Rat Genome Database

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Gene: AC008759.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC008759.2
Name: novel transcript
RGD ID: 16564739
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl199,730,853 - 9,731,943 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:255
Interacting mature miRNAs:257
Transcripts:ENST00000585880
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 16
Low 1535 886 1050 199 471 65 1491 755 3296 199 1206 1048 134 449 1005 1
Below cutoff 713 1547 514 284 723 265 2036 885 360 174 169 416 27 624 1178 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000585880
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl199,730,853 - 9,731,943 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008759.2 COSMIC
Ensembl Genes ENSG00000267612 Ensembl
GTEx ENSG00000267612 GTEx
Human Proteome Map AC008759.2 Human Proteome Map