AC005336.1 (inositol polyphosphate multikinase (IPMK) pseudogene) - Rat Genome Database

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Gene: AC005336.1 (inositol polyphosphate multikinase (IPMK) pseudogene) Homo sapiens
Analyze
Symbol: AC005336.1
Name: inositol polyphosphate multikinase (IPMK) pseudogene
RGD ID: 16564418
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: inositol polyphosphate multikinase pseudogene; LOC729654
Related Functional Gene: IPMK  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,907,767 - 15,912,097 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,910,582 - 15,911,824 (-)EnsemblGRCh38hg38GRCh38
GRCh371916,018,577 - 16,022,907 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.12NCBI
HuRef1915,589,839 - 15,594,214 (-)NCBIHuRef
CHM1_11916,018,357 - 16,022,724 (-)NCBICHM1_1
T2T-CHM13v2.01916,038,988 - 16,043,326 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:308
Count of miRNA genes:286
Interacting mature miRNAs:296
Transcripts:ENST00000585431
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 13 186 180 3 184 2 1 1 22 112 68 1
Low 639 907 790 356 203 248 1040 62 2259 196 570 574 115 35 940
Below cutoff 1040 890 523 59 416 19 1893 1079 1175 136 475 595 39 566 1173

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000585431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1915,910,582 - 15,911,824 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005336.1 COSMIC
Ensembl Genes ENSG00000267056 Ensembl, ENTREZGENE
GTEx ENSG00000267056 GTEx
Human Proteome Map AC005336.1 Human Proteome Map
NCBI Gene LOC729654 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC005336.1  inositol polyphosphate multikinase (IPMK) pseudogene  LOC729654  inositol polyphosphate multikinase pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC729654  inositol polyphosphate multikinase pseudogene  AC005336.1  inositol polyphosphate multikinase (IPMK) pseudogene  Symbol and/or name change 5135510 APPROVED