AC011511.2 (novel transcript, antisense to MRPL4 and ICAM1) - Rat Genome Database

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Gene: AC011511.2 (novel transcript, antisense to MRPL4 and ICAM1) Homo sapiens
Analyze
Symbol: AC011511.2
Name: novel transcript, antisense to MRPL4 and ICAM1
RGD ID: 16564371
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1910,252,268 - 10,285,108 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:234
Interacting mature miRNAs:241
Transcripts:ENST00000592893
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2 1
Low 71 41 163 11 417 14 132 47 80 66 399 434 1 108 42 2
Below cutoff 1421 1441 1028 349 936 239 2244 964 1766 214 580 927 115 743 1298

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000592893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1910,252,268 - 10,285,108 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC011511.2 COSMIC
Ensembl Genes ENSG00000266978 Ensembl
GTEx ENSG00000266978 GTEx
Human Proteome Map AC011511.2 Human Proteome Map