AC055811.3 (novel transcript) - Rat Genome Database

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Gene: AC055811.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC055811.3
Name: novel transcript
RGD ID: 16564253
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1717,235,433 - 17,236,118 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:315
Interacting mature miRNAs:326
Transcripts:ENST00000584952
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 241 377 539 71 442 62 799 187 640 64 596 604 14 181 468 3
Below cutoff 1575 1661 951 393 892 270 2578 1423 2288 196 632 815 128 741 1686 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000584952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1717,235,433 - 17,236,118 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC055811.3 COSMIC
Ensembl Genes ENSG00000266498 Ensembl
GTEx ENSG00000266498 GTEx
Human Proteome Map AC055811.3 Human Proteome Map