AC090774.2 (novel transcript, antisense to CCDC144NL) - Rat Genome Database

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Gene: AC090774.2 (novel transcript, antisense to CCDC144NL) Homo sapiens
Analyze
Symbol: AC090774.2
Name: novel transcript, antisense to CCDC144NL
RGD ID: 16564229
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1720,855,946 - 20,857,317 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:137
Interacting mature miRNAs:139
Transcripts:ENST00000435925, ENST00000578888
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 2 2
Low 88 138 232 16 49 16 175 33 1345 12 598 34 9 131
Below cutoff 1199 1413 521 100 400 54 1419 833 1964 89 478 532 47 418 985

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000578888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1720,855,946 - 20,857,317 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090774.2 COSMIC
Ensembl Genes ENSG00000266369 Ensembl
GTEx ENSG00000266369 GTEx
Human Proteome Map AC090774.2 Human Proteome Map