AC084125.4 (novel transcript, antisense to RECQL4) - Rat Genome Database

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Gene: AC084125.4 (novel transcript, antisense to RECQL4) Homo sapiens
Analyze
Symbol: AC084125.4
Name: novel transcript, antisense to RECQL4
RGD ID: 16564063
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8144,512,567 - 144,513,672 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:921
Count of miRNA genes:588
Interacting mature miRNAs:671
Transcripts:ENST00000442850, ENST00000544423, ENST00000580385
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 19 7 7 22 8 5 6 5 1 31 15
Low 215 51 255 166 406 164 305 69 158 240 275 352 12 7 37 3
Below cutoff 293 187 196 73 102 61 340 188 412 45 160 140 12 73 211 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000580385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8144,512,567 - 144,513,672 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC084125.4 COSMIC
Ensembl Genes ENSG00000265393 Ensembl
GTEx ENSG00000265393 GTEx
Human Proteome Map AC084125.4 Human Proteome Map