AC006441.1 (novel transcript, antisense to LASP1) - Rat Genome Database

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Gene: AC006441.1 (novel transcript, antisense to LASP1) Homo sapiens
Analyze
Symbol: AC006441.1
Name: novel transcript, antisense to LASP1
RGD ID: 16563744
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1738,903,704 - 38,904,600 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:146
Interacting mature miRNAs:150
Transcripts:ENST00000581083
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 1 4 3
Low 373 365 255 138 661 105 684 110 349 170 291 492 41 161 355 2
Below cutoff 1514 1644 905 291 818 185 2322 1101 1677 143 735 834 109 768 1433 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000581083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1738,903,704 - 38,904,600 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC006441.1 COSMIC
Ensembl Genes ENSG00000263466 Ensembl
GTEx ENSG00000263466 GTEx
Human Proteome Map AC006441.1 Human Proteome Map