GS1-279B7.1 (microtubule associated protein 1 light chain 3 beta pseudogene) - Rat Genome Database

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Gene: GS1-279B7.1 (microtubule associated protein 1 light chain 3 beta pseudogene) Homo sapiens
Analyze
Symbol: GS1-279B7.1
Name: microtubule associated protein 1 light chain 3 beta pseudogene
RGD ID: 16563054
Description: INTERACTS WITH aflatoxin B1
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: AL078644.1; microtubule associated protein 1 light chain 3 beta (MAP1LC3B) pseudogene
Related Functional Gene: MAP1LC3B  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,323,846 - 185,335,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,321,157 - 185,335,039 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,292,978 - 185,304,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q25.3NCBI
HuRef1156,528,209 - 156,539,442 (-)NCBIHuRef
CHM1_11186,714,731 - 186,725,925 (-)NCBICHM1_1
T2T-CHM13v2.01184,680,751 - 184,691,946 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
aflatoxin B1  (EXP)

References
Additional References at PubMed
PMID:12801632  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:418
Count of miRNA genes:355
Interacting mature miRNAs:371
Transcripts:ENST00000562817, ENST00000563533, ENST00000565520
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 8
Low 21 14 11 7 118 7 66 12 31 27 384 66 3
Below cutoff 531 786 529 176 882 98 1349 318 1007 171 495 629 90 318 729 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000562817
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,321,157 - 185,333,068 (-)Ensembl
RefSeq Acc Id: ENST00000563533
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,323,846 - 185,335,007 (-)Ensembl
RefSeq Acc Id: ENST00000565520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,331,257 - 185,335,039 (-)Ensembl
RefSeq Acc Id: ENST00000641809
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,332,903 - 185,333,280 (-)Ensembl
RefSeq Acc Id: NR_038424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,323,846 - 185,335,039 (-)NCBI
T2T-CHM13v2.01184,680,751 - 184,691,946 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC GS1-279B7.1 COSMIC
Ensembl Genes ENSG00000261024 Ensembl
  ENSG00000293113 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000563533 ENTREZGENE
GTEx ENSG00000261024 GTEx
  ENSG00000293113 GTEx
Human Proteome Map GS1-279B7.1 Human Proteome Map
NCBI Gene GS1-279B7.1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 GS1-279B7.1  microtubule associated protein 1 light chain 3 beta pseudogene  AL078644.1  microtubule associated protein 1 light chain 3 beta (MAP1LC3B) pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AL078644.1  microtubule associated protein 1 light chain 3 beta (MAP1LC3B) pseudogene  GS1-279B7.1  microtubule associated protein 1 light chain 3 beta pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 GS1-279B7.1  microtubule associated protein 1 light chain 3 beta pseudogene  AL078644.1  microtubule associated protein 1 light chain 3 beta (MAP1LC3B) pseudogene  Symbol and/or name change 5135510 APPROVED