AL590004.3 (novel transcript) - Rat Genome Database

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Gene: AL590004.3 (novel transcript) Homo sapiens
Analyze
Symbol: AL590004.3
Name: novel transcript
RGD ID: 16562834
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl63,904,920 - 3,911,979 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:117
Interacting mature miRNAs:117
Transcripts:ENST00000566733
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 8 47 4 4 6 4 17 4 9 7 19 1
Low 312 1542 207 103 3 90 1168 508 90 104 190 286 19 324 828 1
Below cutoff 1922 826 1303 448 551 308 2854 1619 3133 239 1162 1192 142 868 1877 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000566733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl63,904,920 - 3,912,072 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL590004.3 COSMIC
Ensembl Genes ENSG00000260604 Ensembl
GTEx ENSG00000260604 GTEx
Human Proteome Map AL590004.3 Human Proteome Map