AL049796.1 (novel transcript) - Rat Genome Database

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Gene: AL049796.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL049796.1
Name: novel transcript
RGD ID: 16562758
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl193,847,174 - 93,848,939 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:104
Interacting mature miRNAs:106
Transcripts:ENST00000565336
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 127 150 1
Low 1736 1674 1178 149 543 83 2686 1155 3451 296 1188 1455 77 887 1766 2
Below cutoff 687 1099 527 455 927 363 1658 1030 130 120 108 152 93 316 1020 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000565336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,847,174 - 93,848,939 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL049796.1 COSMIC
Ensembl Genes ENSG00000260464 Ensembl
GTEx ENSG00000260464 GTEx
Human Proteome Map AL049796.1 Human Proteome Map