AC008060.4 (novel transcript, overlapping novel protein) - Rat Genome Database

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Gene: AC008060.4 (novel transcript, overlapping novel protein) Homo sapiens
Analyze
Symbol: AC008060.4
Name: novel transcript, overlapping novel protein
RGD ID: 16562744
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl7155,399,922 - 155,401,782 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:208
Interacting mature miRNAs:214
Transcripts:ENST00000569431
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 1 557 7 4
Low 1 2 16 8 11 8 5 3 1482 8 388 12 3
Below cutoff 353 351 347 75 169 43 750 324 922 51 224 257 31 170 506

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000569431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7155,399,922 - 155,401,782 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008060.4 COSMIC
Ensembl Genes ENSG00000260426 Ensembl
GTEx ENSG00000260426 GTEx
Human Proteome Map AC008060.4 Human Proteome Map