AC107068.1 (novel transcript) - Rat Genome Database

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Gene: AC107068.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC107068.1
Name: novel transcript
RGD ID: 16562503
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl447,840,122 - 47,844,339 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:144
Interacting mature miRNAs:151
Transcripts:ENST00000408837, ENST00000563286
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 1 8 43 312 4 23 9 1
Low 2421 2326 1647 559 1505 402 4140 1860 3334 388 1421 1595 169 1161 2622 4
Below cutoff 9 651 75 63 428 62 172 333 62 25 4 4 1 43 166

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000563286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl447,840,122 - 47,844,339 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC107068.1 COSMIC
Ensembl Genes ENSG00000259959 Ensembl
GTEx ENSG00000259959 GTEx
Human Proteome Map AC107068.1 Human Proteome Map