AC009754.1 (novel transcript, intronic to KIAA1370) - Rat Genome Database

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Gene: AC009754.1 (novel transcript, intronic to KIAA1370) Homo sapiens
Analyze
Symbol: AC009754.1
Name: novel transcript, intronic to KIAA1370
RGD ID: 16562490
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1552,648,634 - 52,649,866 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:64
Interacting mature miRNAs:64
Transcripts:ENST00000566282
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 10 1 2
Low 874 712 900 190 874 82 1861 540 1236 90 971 934 109 673 1147 1
Below cutoff 1349 1762 676 340 659 292 2089 1395 2064 248 385 556 55 480 1446 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000566282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1552,648,634 - 52,649,866 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009754.1 COSMIC
Ensembl Genes ENSG00000259935 Ensembl
GTEx ENSG00000259935 GTEx
Human Proteome Map AC009754.1 Human Proteome Map