AC126323.2 (novel transcript) - Rat Genome Database

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Gene: AC126323.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC126323.2
Name: novel transcript
RGD ID: 16562360
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC107984784; uncharacterized LOC107984784
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381562,196,161 - 62,203,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1562,196,066 - 62,222,911 (-)EnsemblGRCh38hg38GRCh38
GRCh371562,488,360 - 62,495,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q22.2NCBI
CHM1_11562,608,091 - 62,635,863 (-)NCBICHM1_1
T2T-CHM13v2.01560,000,172 - 60,007,328 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NC_000015.10:g.61919523_62253599dup duplication See cases [RCV001291766] Chr15:61919523..62253599 [GRCh38]
Chr15:15q22.2		 uncertain significance
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q21.3-22.2(chr15:57567950-63019415)x1 copy number loss See cases [RCV000051622] Chr15:57567950..63019415 [GRCh38]
Chr15:57860148..63311614 [GRCh37]
Chr15:55647440..61098667 [NCBI36]
Chr15:15q21.3-22.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENST00000559985
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 248
Low 2 20 1 7 1 2 1 1 6 125 24 1
Below cutoff 551 378 220 68 277 54 664 404 372 119 232 370 25 138 332 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000559985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,196,145 - 62,203,318 (-)Ensembl
RefSeq Acc Id: ENST00000654663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,196,066 - 62,197,979 (-)Ensembl
RefSeq Acc Id: ENST00000657134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,196,454 - 62,222,911 (-)Ensembl
RefSeq Acc Id: ENST00000700345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,193,542 - 62,222,605 (-)Ensembl
RefSeq Acc Id: ENST00000700346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,195,987 - 62,203,750 (-)Ensembl
RefSeq Acc Id: ENST00000700347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1562,196,062 - 62,213,376 (-)Ensembl
RefSeq Acc Id: NR_148210
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381562,196,161 - 62,203,318 (-)NCBI
T2T-CHM13v2.01560,000,172 - 60,007,328 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC126323.2 COSMIC
Ensembl Genes ENSG00000259697 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000559985 ENTREZGENE
GTEx ENSG00000259697 GTEx
Human Proteome Map AC126323.2 Human Proteome Map
NCBI Gene LOC107984784 ENTREZGENE
RNAcentral URS0000BC452E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC126323.2  novel transcript  LOC107984784  uncharacterized LOC107984784  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC107984784  uncharacterized LOC107984784  AC126323.2  novel transcript  Symbol and/or name change 5135510 APPROVED