AC087612.1 (novel transcript) - Rat Genome Database

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Gene: AC087612.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC087612.1
Name: novel transcript
RGD ID: 16562343
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1563,091,085 - 63,110,589 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:220
Interacting mature miRNAs:227
Transcripts:ENST00000560238
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 15 7 1
Low 64 18 150 3 23 2 28 8 172 315 25 4 3 23
Below cutoff 1094 830 414 104 348 79 1433 722 1194 105 496 488 31 325 982 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000560238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1563,098,870 - 63,110,403 (+)Ensembl
RefSeq Acc Id: ENST00000648659
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1563,091,367 - 63,110,589 (+)Ensembl
RefSeq Acc Id: ENST00000656894
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1563,098,979 - 63,110,588 (+)Ensembl
RefSeq Acc Id: ENST00000662650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1563,105,773 - 63,110,587 (+)Ensembl
RefSeq Acc Id: ENST00000665500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1563,091,085 - 63,110,589 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087612.1 COSMIC
Ensembl Genes ENSG00000259672 Ensembl
GTEx ENSG00000259672 GTEx
Human Proteome Map AC087612.1 Human Proteome Map