AC021231.3 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2) pseudogene) - Rat Genome Database

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Pathways
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Gene: AC021231.3 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2) pseudogene) Homo sapiens
Analyze
Symbol: AC021231.3
Name: transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2) pseudogene
RGD ID: 16562339
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1535,081,144 - 35,081,513 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:278
Interacting mature miRNAs:290
Transcripts:ENST00000558497
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 491 283 670 123 179 101 1193 302 1046 145 901 445 23 257 745
Below cutoff 1296 1271 754 319 369 213 2090 1170 1844 167 346 655 108 656 1326 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000558497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1535,081,144 - 35,081,513 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC021231.3 COSMIC
Ensembl Genes ENSG00000259665 Ensembl
GTEx ENSG00000259665 GTEx
Human Proteome Map AC021231.3 Human Proteome Map