AC115102.1 (novel transcript, antisense to SEC11A) - Rat Genome Database

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Gene: AC115102.1 (novel transcript, antisense to SEC11A) Homo sapiens
Analyze
Symbol: AC115102.1
Name: novel transcript, antisense to SEC11A
RGD ID: 16562332
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1584,685,884 - 84,686,946 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:235
Interacting mature miRNAs:241
Transcripts:ENST00000558044
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 12 1
Low 188 289 207 64 329 29 545 73 241 71 255 407 37 104 270 1
Below cutoff 1256 1548 990 314 853 222 2099 926 1711 219 774 838 100 660 1318 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000558044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1584,685,884 - 84,686,946 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC115102.1 COSMIC
Ensembl Genes ENSG00000259654 Ensembl
GTEx ENSG00000259654 GTEx
Human Proteome Map AC115102.1 Human Proteome Map