AL161757.5 (novel transcript, antisense to TMEM260) - Rat Genome Database

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Gene: AL161757.5 (novel transcript, antisense to TMEM260) Homo sapiens
Analyze
Symbol: AL161757.5
Name: novel transcript, antisense to TMEM260
RGD ID: 16562035
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1456,648,965 - 56,730,535 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:400
Count of miRNA genes:351
Interacting mature miRNAs:367
Transcripts:ENST00000554597, ENST00000556696
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium
Low 87 11 43 19 183 22 187 46 75 60 97 209 9 1 2 3
Below cutoff 132 65 198 83 117 80 260 57 225 134 297 158 4 41 103 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000554597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1456,648,965 - 56,730,506 (-)Ensembl
RefSeq Acc Id: ENST00000556696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1456,723,137 - 56,730,535 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL161757.5 COSMIC
Ensembl Genes ENSG00000259133 Ensembl
GTEx ENSG00000259133 GTEx
Human Proteome Map AL161757.5 Human Proteome Map