AF111169.3 (novel transcript) - Rat Genome Database

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Gene: AF111169.3 (novel transcript) Homo sapiens
Analyze
Symbol: AF111169.3
Name: novel transcript
RGD ID: 16562007
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1476,774,284 - 76,781,518 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:589
Count of miRNA genes:454
Interacting mature miRNAs:513
Transcripts:ENST00000553507, ENST00000556368
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 11 50 4 31 12 5 4
Low 2059 2308 1372 311 878 167 3373 1460 3322 239 1320 1425 149 1179 2100 2
Below cutoff 331 548 304 276 638 262 900 686 349 161 93 147 21 25 643 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000553507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1476,780,708 - 76,781,456 (-)Ensembl
RefSeq Acc Id: ENST00000556368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1476,774,284 - 76,781,518 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AF111169.3 COSMIC
Ensembl Genes ENSG00000259081 Ensembl
GTEx ENSG00000259081 GTEx
Human Proteome Map AF111169.3 Human Proteome Map