AL136298.1 (novel transcript, antisense to AKAP6) - Rat Genome Database

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Gene: AL136298.1 (novel transcript, antisense to AKAP6) Homo sapiens
Analyze
Symbol: AL136298.1
Name: novel transcript, antisense to AKAP6
RGD ID: 16561746
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1432,373,337 - 32,417,974 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:464
Count of miRNA genes:396
Interacting mature miRNAs:426
Transcripts:ENST00000556520, ENST00000557371
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 7 1 4 3 3
Low 56 163 28 64 14 2 418 132 385 5 29 48 63 3 353
Below cutoff 959 903 445 119 193 39 908 765 1393 121 469 361 85 275 578

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000556520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1432,403,044 - 32,417,974 (-)Ensembl
RefSeq Acc Id: ENST00000557371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1432,373,337 - 32,417,963 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL136298.1 COSMIC
Ensembl Genes ENSG00000258580 Ensembl
GTEx ENSG00000258580 GTEx
Human Proteome Map AL136298.1 Human Proteome Map