AC068896.1 (novel transcript, METTL10-FAM53B readthrough) - Rat Genome Database

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Gene: AC068896.1 (novel transcript, METTL10-FAM53B readthrough) Homo sapiens
Analyze
Symbol: AC068896.1
Name: novel transcript, METTL10-FAM53B readthrough
RGD ID: 16561726
Description: ENCODES a protein that exhibits methyltransferase activity (inferred); INVOLVED IN methylation (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
Previously known as: AC068896.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl10124,617,080 - 124,791,727 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
methylation  (IEA)

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1695
Count of miRNA genes:849
Interacting mature miRNAs:999
Transcripts:ENST00000366275, ENST00000494792
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium 1 16
Low 44 7 51 6 243 9 84 19 55 27 103 131 2 1
Below cutoff 157 20 206 184 295 185 213 45 105 255 213 236 6 1 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000494792   ⟹   ENSP00000455755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10124,617,080 - 124,791,727 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000455755.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000455755   ⟸   ENST00000494792
Protein Domains
Methyltransferase


Additional Information

Database Acc Id Source(s)
COSMIC AC068896.1 COSMIC
Ensembl Genes ENSG00000258539 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000494792.1 UniProtKB/TrEMBL
Gene3D-CATH Vaccinia Virus protein VP39 UniProtKB/TrEMBL
GTEx ENSG00000258539 GTEx
Human Proteome Map AC068896.1 Human Proteome Map
InterPro Efm4/METTL10 UniProtKB/TrEMBL
  Methyltranfer_dom UniProtKB/TrEMBL
  SAM-dependent_MTases_sf UniProtKB/TrEMBL
PANTHER EEF1A LYSINE METHYLTRANSFERASE 2 UniProtKB/TrEMBL
  PROTEIN-LYSINE N-METHYLTRANSFERASE METTL10 UniProtKB/TrEMBL
Pfam Methyltransf_31 UniProtKB/TrEMBL
Superfamily-SCOP S-adenosyl-L-methionine-dependent methyltransferases UniProtKB/TrEMBL
UniProt H3BQF6_HUMAN UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC068896.1  novel transcript, METTL10-FAM53B readthrough  AC068896.3  novel transcript, METTL10-FAM53B readthrough  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC068896.3  novel transcript, METTL10-FAM53B readthrough  AC068896.1  novel transcript, METTL10-FAM53B readthrough  Symbol and/or name change 19259462 PROVISIONAL