LOC124902988 (uncharacterized LOC124902988) - Rat Genome Database

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Gene: LOC124902988 (uncharacterized LOC124902988) Homo sapiens
Analyze
Symbol: LOC124902988 (Ensembl: AC123567.2)
Name: uncharacterized LOC124902988 (Ensembl:novel transcript, antisense to PLXNC1)
RGD ID: 16561510
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC123567.2; novel transcript, antisense to PLXNC1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381294,168,005 - 94,176,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1294,167,528 - 94,187,724 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map12q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC124902988
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:115
Interacting mature miRNAs:117
Transcripts:ENST00000550759, ENST00000551029
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1
Low 5 305 268 4 533 4 10 4 1016 4 258 133 10 7
Below cutoff 276 522 246 95 518 67 409 157 1625 51 347 342 29 207 238

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_007063411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000550759
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1294,168,009 - 94,186,044 (-)Ensembl
RefSeq Acc Id: ENST00000551029
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1294,168,006 - 94,176,404 (-)Ensembl
RefSeq Acc Id: ENST00000659763
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1294,185,096 - 94,187,724 (-)Ensembl
RefSeq Acc Id: ENST00000669622
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1294,167,528 - 94,187,045 (-)Ensembl
RefSeq Acc Id: XR_007063411
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381294,168,005 - 94,176,463 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124902988 COSMIC
Ensembl Genes ENSG00000258035 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000551029 ENTREZGENE
GTEx ENSG00000258035 GTEx
Human Proteome Map LOC124902988 Human Proteome Map
NCBI Gene LOC124902988 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124902988  uncharacterized LOC124902988  AC123567.2  novel transcript, antisense to PLXNC1  Symbol and/or name change 5135510 APPROVED