AL139020.1 (novel transcript, antisense to TCL1A) - Rat Genome Database

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Gene: AL139020.1 (novel transcript, antisense to TCL1A) Homo sapiens
Analyze
Symbol: AL139020.1
Name: novel transcript, antisense to TCL1A
RGD ID: 16561254
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1495,711,747 - 95,757,656 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:333
Count of miRNA genes:301
Interacting mature miRNAs:314
Transcripts:ENST00000547644, ENST00000553445, ENST00000556386
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 77 1
Low 72 232 25 1 895 2 11 2 1 10 256 26 3 1
Below cutoff 543 762 341 142 818 120 657 240 727 154 402 597 31 231 291 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000547644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1495,711,747 - 95,755,667 (+)Ensembl
RefSeq Acc Id: ENST00000553445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1495,711,757 - 95,755,578 (+)Ensembl
RefSeq Acc Id: ENST00000556386
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1495,715,480 - 95,757,656 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL139020.1 COSMIC
Ensembl Genes ENSG00000257275 Ensembl
GTEx ENSG00000257275 GTEx
Human Proteome Map AL139020.1 Human Proteome Map