AC073530.1 (novel transcript) - Rat Genome Database

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Gene: AC073530.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC073530.1
Name: novel transcript
RGD ID: 16561198
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC102724421; uncharacterized LOC102724421
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381267,077,626 - 67,096,284 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1266,950,754 - 67,096,410 (-)EnsemblGRCh38hg38GRCh38
GRCh371267,471,406 - 67,490,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q14.3NCBI
CHM1_11267,438,316 - 67,456,978 (-)NCBICHM1_1
T2T-CHM13v2.01267,057,053 - 67,075,712 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16344560  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q14.3-15(chr12:65958499-69057308)x1 copy number loss See cases [RCV000052816] Chr12:65958499..69057308 [GRCh38]
Chr12:66352279..69451088 [GRCh37]
Chr12:64638546..67737355 [NCBI36]
Chr12:12q14.3-15		 pathogenic|likely pathogenic
GRCh38/hg38 12q14.3-15(chr12:65445176-71026337)x1 copy number loss See cases [RCV000142445] Chr12:65445176..71026337 [GRCh38]
Chr12:65838956..71420117 [GRCh37]
Chr12:64125223..69706384 [NCBI36]
Chr12:12q14.3-15		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:159
Interacting mature miRNAs:163
Transcripts:ENST00000502700, ENST00000535917, ENST00000538008
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9
Low 1 25 1 4 9 360 4 2
Below cutoff 363 96 237 58 292 22 645 201 344 82 191 228 41 53 294 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000502700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1267,086,778 - 67,095,554 (-)Ensembl
RefSeq Acc Id: ENST00000535917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1267,035,453 - 67,096,406 (-)Ensembl
RefSeq Acc Id: ENST00000538008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1267,077,619 - 67,096,395 (-)Ensembl
RefSeq Acc Id: ENST00000652412
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1266,950,754 - 67,096,410 (-)Ensembl
RefSeq Acc Id: ENST00000659421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1267,090,762 - 67,096,406 (-)Ensembl
RefSeq Acc Id: ENST00000661528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1267,086,793 - 67,096,361 (-)Ensembl
RefSeq Acc Id: NR_120490
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381267,077,626 - 67,096,284 (-)NCBI
T2T-CHM13v2.01267,057,053 - 67,075,712 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC073530.1 COSMIC
Ensembl Genes ENSG00000257083 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000538008 ENTREZGENE
GTEx ENSG00000257083 GTEx
Human Proteome Map AC073530.1 Human Proteome Map
NCBI Gene LOC102724421 ENTREZGENE
RNAcentral URS0000335BCC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC073530.1  novel transcript  LOC102724421  uncharacterized LOC102724421  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102724421  uncharacterized LOC102724421  AC073530.1  novel transcript  Symbol and/or name change 5135510 APPROVED