AC048338.1 (novel protein) - Rat Genome Database

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Gene: AC048338.1 (novel protein) Homo sapiens
Analyze
Symbol: AC048338.1
Name: novel protein
RGD ID: 16561141
Description: INVOLVED IN protein transport (inferred); vesicle-mediated transport (inferred); FOUND IN clathrin-coated vesicle (inferred); early endosome (inferred); endosome (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl12122,207,779 - 122,266,423 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:541
Count of miRNA genes:423
Interacting mature miRNAs:451
Transcripts:ENST00000535844
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system entire extraembryonic component pharyngeal arch
High
Medium 1 2
Low 7 7 2 2 3 1 1 4 24 1 12 5 4 1 2 2
Below cutoff 4 5 4 31 4 9 2 1 14 6

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000535844   ⟹   ENSP00000454454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12122,207,779 - 122,266,423 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000454454.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000454454   ⟸   ENST00000535844


Additional Information

Database Acc Id Source(s)
COSMIC AC048338.1 COSMIC
Ensembl Genes ENSG00000256861 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000535844.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.850 UniProtKB/TrEMBL
  3.40.50.1910 UniProtKB/TrEMBL
  3.40.50.2060 UniProtKB/TrEMBL
GTEx ENSG00000256861 GTEx
Human Proteome Map AC048338.1 Human Proteome Map
InterPro Sec-1-like_dom1 UniProtKB/TrEMBL
  Sec-1-like_dom2 UniProtKB/TrEMBL
  Sec-1-like_dom3a UniProtKB/TrEMBL
  Sec1-like UniProtKB/TrEMBL
  Sec1-like_sf UniProtKB/TrEMBL
  VPS33_dom3b UniProtKB/TrEMBL
PANTHER PTHR11679 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33A UniProtKB/TrEMBL
Pfam Sec1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56815 UniProtKB/TrEMBL
UniProt H3BMM5_HUMAN UniProtKB/TrEMBL