AP003785.1 (novel transcript) - Rat Genome Database

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Gene: AP003785.1 (novel transcript) Homo sapiens
Analyze
Symbol: AP003785.1
Name: novel transcript
RGD ID: 16561037
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1172,410,716 - 72,412,079 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:379
Count of miRNA genes:343
Interacting mature miRNAs:370
Transcripts:ENST00000544959
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 18 1 2 15 2 1
Below cutoff 155 136 123 26 145 19 203 82 227 25 270 110 8 73 121

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000544959
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1172,410,716 - 72,412,079 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP003785.1 COSMIC
Ensembl Genes ENSG00000256403 Ensembl
GTEx ENSG00000256403 GTEx
Human Proteome Map AP003785.1 Human Proteome Map