AL583722.1 (novel transcript) - Rat Genome Database

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Gene: AL583722.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL583722.1
Name: novel transcript
RGD ID: 16560951
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl14104,681,146 - 104,684,932 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:74
Interacting mature miRNAs:74
Transcripts:ENST00000540171
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 5 1 1
Low 485 774 198 45 98 34 1068 71 2136 79 156 176 26 66 908
Below cutoff 1799 1640 761 295 967 163 2613 1482 1275 208 950 890 133 947 1452 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000540171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14104,681,146 - 104,684,932 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL583722.1 COSMIC
Ensembl Genes ENSG00000256050 Ensembl
GTEx ENSG00000256050 GTEx
Human Proteome Map AL583722.1 Human Proteome Map