AC022509.1 (novel transcript, antisense to SSPN) - Rat Genome Database

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Gene: AC022509.1 (novel transcript, antisense to SSPN) Homo sapiens
Analyze
Symbol: AC022509.1
Name: novel transcript, antisense to SSPN
RGD ID: 16560873
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1226,229,548 - 26,319,720 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:486
Count of miRNA genes:280
Interacting mature miRNAs:287
Transcripts:ENST00000537525, ENST00000540625, ENST00000541940
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 1 1 1 6 85
Low 47 6 31 57 143 16 15 7 48 86 126 33 42 2 5 1
Below cutoff 327 143 238 142 366 70 405 178 646 153 404 302 78 93 232 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000537525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1226,229,548 - 26,271,822 (-)Ensembl
RefSeq Acc Id: ENST00000540625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1226,230,819 - 26,319,720 (-)Ensembl
RefSeq Acc Id: ENST00000541940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1226,231,394 - 26,271,920 (-)Ensembl
RefSeq Acc Id: ENST00000659327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1226,229,865 - 26,271,827 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC022509.1 COSMIC
Ensembl Genes ENSG00000255750 Ensembl
GTEx ENSG00000255750 GTEx
Human Proteome Map AC022509.1 Human Proteome Map