DPP3-DT (DPP3 divergent transcript) - Rat Genome Database

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Gene: DPP3-DT (DPP3 divergent transcript) Homo sapiens
Analyze
Symbol: DPP3-DT
Name: DPP3 divergent transcript
RGD ID: 16560802
HGNC Page HGNC:55494
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AP002748.4; LOC101928069; uncharacterized LOC101928069
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,473,490 - 66,480,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,473,490 - 66,480,296 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,240,961 - 66,247,720 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q13.2NCBI
HuRef1162,572,713 - 62,575,769 (-)NCBIHuRef
CHM1_11166,128,561 - 66,131,464 (-)NCBICHM1_1
T2T-CHM13v2.01166,469,747 - 66,476,506 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in DPP3-DT
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q13.1-13.2(chr11:65741431-67705669)x1 copy number loss See cases [RCV000142881] Chr11:65741431..67705669 [GRCh38]
Chr11:65508902..67473140 [GRCh37]
Chr11:65265478..67229716 [NCBI36]
Chr11:11q13.1-13.2		 pathogenic
GRCh38/hg38 11q13.2(chr11:66193502-67890770)x3 copy number gain See cases [RCV000053623] Chr11:66193502..67890770 [GRCh38]
Chr11:65960973..67658241 [GRCh37]
Chr11:65717549..67414817 [NCBI36]
Chr11:11q13.2		 pathogenic
NM_145065.3(PELI3):c.1058A>T (p.Lys353Ile) single nucleotide variant not specified [RCV004097645] Chr11:66475815 [GRCh38]
Chr11:66243286 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.785G>T (p.Cys262Phe) single nucleotide variant not specified [RCV004192148] Chr11:66473870 [GRCh38]
Chr11:66241341 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.1400C>T (p.Pro467Leu) single nucleotide variant not specified [RCV004149431] Chr11:66476157 [GRCh38]
Chr11:66243628 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.1148A>T (p.Glu383Val) single nucleotide variant not specified [RCV004267291] Chr11:66475905 [GRCh38]
Chr11:66243376 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.1396G>C (p.Gly466Arg) single nucleotide variant not specified [RCV004350919] Chr11:66476153 [GRCh38]
Chr11:66243624 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.1049C>T (p.Ala350Val) single nucleotide variant not specified [RCV004505766] Chr11:66475806 [GRCh38]
Chr11:66243277 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.910C>T (p.Arg304Cys) single nucleotide variant not specified [RCV004505767] Chr11:66475667 [GRCh38]
Chr11:66243138 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_145065.3(PELI3):c.965G>A (p.Arg322Gln) single nucleotide variant not specified [RCV004505768] Chr11:66475722 [GRCh38]
Chr11:66243193 [GRCh37]
Chr11:11q13.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1191
Count of miRNA genes:671
Interacting mature miRNAs:775
Transcripts:ENST00000525142, ENST00000527092, ENST00000527274, ENST00000533502, ENST00000602951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 5 5 2 11 2 4 8 3 399 13 1
Low 2432 2646 1692 594 1797 435 4327 2004 3717 412 1059 1598 173 1 1202 2758 5 2
Below cutoff 2 344 29 28 142 28 30 189 9 4 2 2 2 30 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000525142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,477,348 - 66,480,269 (-)Ensembl
RefSeq Acc Id: ENST00000527092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,473,490 - 66,480,231 (-)Ensembl
RefSeq Acc Id: ENST00000527274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,477,346 - 66,480,296 (-)Ensembl
RefSeq Acc Id: ENST00000533502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,474,359 - 66,480,192 (-)Ensembl
RefSeq Acc Id: ENST00000602951
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,474,250 - 66,474,725 (-)Ensembl
RefSeq Acc Id: ENST00000685616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,493 - 66,480,255 (-)Ensembl
RefSeq Acc Id: ENST00000685992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,493 - 66,480,255 (-)Ensembl
RefSeq Acc Id: ENST00000687655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,493 - 66,480,255 (-)Ensembl
RefSeq Acc Id: ENST00000690327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,474,250 - 66,480,254 (-)Ensembl
RefSeq Acc Id: ENST00000691379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,088 - 66,480,268 (-)Ensembl
RefSeq Acc Id: ENST00000691579
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,088 - 66,480,268 (-)Ensembl
RefSeq Acc Id: ENST00000692385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,479,493 - 66,480,255 (-)Ensembl
RefSeq Acc Id: ENST00000693584
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,477,351 - 66,480,179 (-)Ensembl
RefSeq Acc Id: ENST00000702177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,477,348 - 66,480,241 (-)Ensembl
RefSeq Acc Id: NR_120586
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381166,473,490 - 66,480,249 (-)NCBI
T2T-CHM13v2.01166,469,747 - 66,476,506 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC DPP3-DT COSMIC
Ensembl Genes ENSG00000255517 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000527092 ENTREZGENE
GTEx ENSG00000255517 GTEx
HGNC ID HGNC:55494 ENTREZGENE
Human Proteome Map DPP3-DT Human Proteome Map
NCBI Gene LOC101928069 ENTREZGENE
RNAcentral URS000075E539 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-22 DPP3-DT  DPP3 divergent transcript  AP002748.4  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AP002748.4  novel transcript  LOC101928069  uncharacterized LOC101928069  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC101928069  uncharacterized LOC101928069  AP002748.4  novel transcript  Symbol and/or name change 5135510 APPROVED