AP000442.1 (novel transcript) - Rat Genome Database

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Gene: AP000442.1 (novel transcript) Homo sapiens
Analyze
Symbol: AP000442.1
Name: novel transcript
RGD ID: 16560603
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1159,565,923 - 59,639,861 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:221
Interacting mature miRNAs:229
Transcripts:ENST00000531108, ENST00000531311
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 68 15 110 40 2 33 1 320 133 11 35
Low 2392 2731 1691 607 1759 449 4058 1838 2926 399 1120 1464 170 1188 2515 4
Below cutoff 34 180 17 15 62 15 254 348 734 16 8 11 5 235

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000531108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,616,429 - 59,639,542 (+)Ensembl
RefSeq Acc Id: ENST00000531311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,620,414 - 59,639,861 (+)Ensembl
RefSeq Acc Id: ENST00000653120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,616,332 - 59,621,014 (+)Ensembl
RefSeq Acc Id: ENST00000661394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,565,923 - 59,639,491 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000442.1 COSMIC
Ensembl Genes ENSG00000255139 Ensembl
GTEx ENSG00000255139 GTEx
Human Proteome Map AP000442.1 Human Proteome Map