AP002008.2 (novel pseudogene) - Rat Genome Database

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Gene: AP002008.2 (novel pseudogene) Homo sapiens
Analyze
Symbol: AP002008.2
Name: novel pseudogene
RGD ID: 16560578
Description:
Type: transcribed_unitary_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl11111,448,450 - 111,475,397 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:424
Interacting mature miRNAs:471
Transcripts:ENST00000527555, ENST00000528953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 12 43 1
Below cutoff 585 798 321 140 210 44 1236 805 1408 55 597 555 97 283 934

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000527555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11111,454,985 - 111,458,151 (+)Ensembl
RefSeq Acc Id: ENST00000528953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11111,451,339 - 111,456,605 (+)Ensembl
RefSeq Acc Id: ENST00000531009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11111,449,868 - 111,451,311 (+)Ensembl
RefSeq Acc Id: ENST00000635926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11111,448,450 - 111,473,381 (+)Ensembl
RefSeq Acc Id: ENST00000637111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11111,464,589 - 111,475,397 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP002008.2 COSMIC
Ensembl Genes ENSG00000255093 Ensembl
GTEx ENSG00000255093 GTEx
Human Proteome Map AP002008.2 Human Proteome Map